LSRN Schema Registry
This Version http://www.lsrn.org/lsrn/registry-2009-04-26-32404 [.html] [.rdf] Previous Stable Version http://www.lsrn.org/lsrn/registry-2006-03-04-4319 [.html] [.rdf] Latest Version http://www.lsrn.org/lsrn/registry [.html] [.rdf] Contributors Sergei Egorov <esl@ariadnegenomics.com>
Copyright © 2006 LSRN Editors
GO.xrf_abbs Copyright © 1999-2006 the Gene Ontology Consortium
This work is licensed under a Creative Commons License.
Introduction
This registry lists Life Science Resource Name (LSRN) Schemas supported by LSRN.org’s LSRN Resolver service. LSRN Schema defines a prefix (e.g. GO:), the format of the prefix dependent resource identifier, and associated metadata.
This registry is based on Gene Ontology Consortium’s GO.xrf_abbs file (Revision 2.104), NCBI db_xref format specification (September 13, 2005) and many other sources, such as NCBI’s Dbtag_db. Many records originated from GO.xrf_abbs file are incomplete and need additional curation; not all of them are suitable for automatic processing by LSRN resolver.
Table of Contents
Schemas
AceView_WormGenes:
Database: AceView Worm Genome
URL: http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/
NCBI db_xref | AceView/WormGenes |
---|---|
Primary subject | gene |
ID example | vha-6 |
URL prefix | http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?exdb=AceView&db=worm&term= |
AGI_LocusCode:
Database: Arabidopsis Genome Initiative (TAIR, TIGR, MIPS)
URL: http://www.arabidopsis.org
Primary subject | gene |
---|---|
Subject | protein |
ID example | At2g17950 |
URL prefix | http://mips.gsf.de/cgi-bin/proj/thal/search_gene?code= |
URL prefix | http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=ath1&orf= |
URL prefix | http://arabidopsis.org/servlets/TairObject?type=locus&name= |
AGRICOLA_bib:
Database: AGRICultural OnLine Access
URL: http://agricola.nal.usda.gov/
ID example | bib=0000-05160 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: ID example is strange; can’t find db entry point
AGRICOLA_IND:
Database: AGRICultural OnLine Access
ID example | IND84014403 |
---|
AGRICOLA_NAL:
Database: AGRICultural OnLine Access
URL: http://agricola.nal.usda.gov/
ID example | TP248.2 P76 v.14 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: ID example is strange
ASAP:
Database: A Systematic Annotation Package for Community Analysis of Genomes
URL: https://asap.ahabs.wisc.edu/annotation/php/ASAP1.htm
ID example | 8 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: ID example is strange: can 8 be an ID? Server requires login…
ATCC:
Database: American Type Culture Collection database
URL: http://www.atcc.org/
ID example | CCL-240 |
---|---|
ID subject | HL-60 |
URL prefix | http://www.atcc.org/common/catalog/numSearch/numResults.cfm?collection=ce&ATCCNum= |
ATCC_dna:
Database: American Type Culture Collection database
URL: http://www.atcc.org/
NCBI db_xref | ATCC(dna) |
---|---|
Primary subject | DNA |
ID example | CCL-64D |
ID subject | Mink genomic DNA (Mv 1 Lu) |
URL prefix | http://www.atcc.org/common/catalog/numSearch/numResults.cfm?collection=ce&ATCCNum= |
ATCC_in-host:
Database: American Type Culture Collection database
URL: http://www.atcc.org/
NCBI db_xref | ATCC(in host) |
---|---|
ID example | 123456 |
Editorial Notes
- 2006-02-17 Sergei Egorov: ID example is fake
Axeldb:
Database: A Xenopus laevis database
URL: http://www.dkfz-heidelberg.de/molecular_embryology/axeldb.htm
Primary subject | gene |
---|---|
ID example | 32B3.1 |
URL prefix | http://indigene.ibaic.u-psud.fr/cgi-bin/ace/generic/tree/default?class=Locus&name= |
BDGP_EST:
Database: Berkeley Drosophila Genome Project EST database
URL: http://www.fruitfly.org/EST/index.shtml
ID example | 123456 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: ID example is fake
BDGP_INS:
Database: Berkeley Drosophila Genome Project database — Insertion
ID example | 123456 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: ID example is fake
BIOMD:
Database: BioModels Database
URL: http://www.ebi.ac.uk/biomodels/
ID example | BIOMD0000000045 |
---|---|
URL prefix | http://www.ebi.ac.uk/compneur-srv/biomodels-main/publ-model.do?mid= |
BIOSIS:
Database: BIOSIS previews
ID example | 200200247281 |
---|
BRENDA:
Database: BRENDA, The Comprehensive Enzyme Information System
URL: http://www.brenda.uni-koeln.de/
ID example | 4.2.1.3 |
---|---|
URL prefix | http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno= |
CAS:
Database: CAS Registry
URL: http://www.cas.org/
Primary subject | chemical substance |
---|---|
ID type | registry number |
ID format | up to 9 digits, divided by hyphens into 3 parts; the right digit is a checksum |
ID example | 58-08-2 |
ID subject | caffeine |
ID regexp | [0-9]+[-][0-9]+[-][0-9] |
URL regexp | http://webbook.nist.gov/cgi/cbook.cgi?ID=& |
URL regexp | http://www.chemindustry.com/apps/chemicals?m=s\&t=& |
RNEF property | CAS ID |
CBS:
Database: Center for Biological Sequence Analysis
ID example | NetNGlyc |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: Check http://www.cbs.dtu.dk/services/TMHMM/ ?
CDD:
Database: Conserved Domain Database
URL: http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
ID example | pfam01484 |
---|
CGD:
Database: Candida Genome Database
URL: http://www.candidagenome.org/
ID example | CAL0005516 |
---|---|
URL prefix | http://www.candidagenome.org/cgi-bin/locus.pl?sgdid= |
CGD_LOCUS:
Database: Candida Genome Database
URL: http://www.candidagenome.org/
ID example | orf19.2475 |
---|---|
URL prefix | http://www.candidagenome.org/cgi-bin/locus.pl?locus= |
Editorial Notes
- 2006-02-17 Sergei Egorov: Another ID example is HPW1
CGD_REF:
Database: Candida Genome Database
URL: http://www.candidagenome.org/
ID example | 1490 |
---|---|
URL prefix | http://www.candidagenome.org/cgi-bin/reference/reference.pl?refNo= |
CGEN:
Database: Compugen Gene Ontology Gene Association Data
ID example | PrID131022 |
---|
CGSC:
Database: CGSC: E.coli Genetic Stock Center
URL: http://cgsc.biology.yale.edu/
ID example | rbsK |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: server entry point: check http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/
CHEBI:
Database: Chemical Entities of Biological Interest (ChEBI) database of small molecules
URL: http://www.ebi.ac.uk/chebi/
Primary subject | chemical compound |
---|---|
ID type | sequential identifier |
ID format | positive numeral |
ID example | 27732 |
ID subject | caffeine |
ID regexp | [1-9][0-9]* |
URL prefix | http://www.ebi.ac.uk/chebi/searchId.do?chebiId= |
ChEBI:
Redirect to: CHEBI:
CL:
Database: Cell Type Ontology
URL: http://lists.sourceforge.net/lists/listinfo/obo-cell-type
ID example | 0000041 |
---|
COG_Cluster:
Database: NCBI COG cluster
URL: http://www.ncbi.nlm.nih.gov/COG/
ID example | COG0001 |
---|---|
URL prefix | http://www.ncbi.nlm.nih.gov/COG/new/release/cow.cgi?cog= |
COG_Function:
Database: NCBI COG function
URL: http://www.ncbi.nlm.nih.gov/COG/
ID example | H |
---|---|
URL prefix | http://www.ncbi.nlm.nih.gov/COG/new/release/coglist.cgi?fun= |
COG_Pathway:
Database: NCBI COG pathway
URL: http://www.ncbi.nlm.nih.gov/COG/
ID example | 14 |
---|---|
URL prefix | http://www.ncbi.nlm.nih.gov/COG/new/release/coglist.cgi?pathw= |
dbEST:
Database: EST database maintained at the NCBI
URL: http://www.ncbi.nlm.nih.gov/dbEST/index.html
ID example | BP535535 |
---|
dbSNP:
Database: Variation database maintained at the NCBI
URL: http://www.ncbi.nlm.nih.gov/SNP/
ID example | rs133073 |
---|
dbSTS:
Database: STS database maintained at the NCBI
URL: http://www.ncbi.nlm.nih.gov/dbSTS/index.html
ID example | BV210161 |
---|
DDB:
Database: DictyBase
URL: http://dictybase.org
ID example | DDB0001836 |
---|---|
URL prefix | http://dictybase.org/db/cgi-bin/gene_page.pl?dictybaseid= |
DDB_gene_name:
Database: DictyBase
URL: http://dictybase.org
ID example | mlcE |
---|---|
URL prefix | http://dictybase.org/db/cgi-bin/gene_page.pl?gene_name= |
DDB_REF:
Database: DictyBase literature references
URL: http://dictybase.org
ID example | 10157 |
---|---|
URL prefix | http://dictybase.org/db/cgi-bin/dictyBase/reference/reference.pl?refNo= |
DDBJ:
Redirect to: INSD:
dictyBase:
Database: Dictyostelium genome database
ID example | DDB0191090 |
---|
DragonDB_Allele:
Database: Antirrhinum majus genome database Allele
URL: http://www.antirrhinum.net/
Primary subject | gene |
---|---|
ID example | cho |
URL prefix | http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?class=Allele;name= |
DragonDB_DNA:
Database: Antirrhinum majus genome database DNA Sequence
URL: http://www.antirrhinum.net/
Primary subject | DNA |
---|---|
ID example | 3hB06 |
URL prefix | http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?class=Sequence;name= |
DragonDB_Locus:
Database: Antirrhinum majus genome database Locus
URL: http://www.antirrhinum.net/
Primary subject | gene |
---|---|
ID example | DEF |
URL prefix | http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?class=Locus;name= |
DragonDB_Protein:
Database: Antirrhinum majus genome database Protein
URL: http://www.antirrhinum.net/
Primary subject | protein |
---|---|
ID example | AMDEFA |
URL prefix | http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?class=Protein;name= |
EC:
Database: The IUBMB Enzyme Commission
URL: http://www.chem.qmw.ac.uk/iubmb/enzyme/
Primary subject | enzyme |
---|---|
ID type | registry number |
ID format | N.N.N.N where N is either a number or ‘-‘ |
ID example | 3.4.11.4 |
ID subject | tripeptide aminopeptidase |
ID regexp | ([0-9]+|[-])[.]([0-9]+|[-])[.]([0-9]+|[-])[.]([0-9]+|[-]) |
URL prefix | http://www.genome.ad.jp/dbget-bin/www_bget?ec: |
RNEF property | EC Number |
Editorial Notes
- 2006-02-17 Sergei Egorov: server entry point: check http://www.chem.qmw.ac.uk/iubmb/enzyme/EC1/1/1/1.html
EcoCyc:
Database: The Encylopedia of E. coli metabolism
URL: http://ecocyc.org/
ID example | P2-PWY |
---|---|
URL prefix | http://malibu.ai.sri.com:1555/ECOLI/new-image?type=PATHWAY&object=? |
ECOGENE:
Database: CGSC: E.coli Genetic Stock Center
URL: http://cgsc.biology.yale.edu/
ID example | EG10818 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: server entry point: check http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/315
ECOGENE_G:
Database: CGSC: E.coli Genetic Stock Center
URL: http://cgsc.biology.yale.edu/
ID example | deoC |
---|
EMBL:
Redirect to: INSD:
ENSEMBL:
Database: Database of automatically annotated genomic data
ID example | HUMAN-Gene-ENSG00000007102 |
---|---|
URL prefix | http://www.ensembl.org/perl/protview?peptide= |
ENZYME:
Database: The Swiss Institute of Bioinformatics database of Enzymes
ID example | 1.1.1.1 |
---|---|
URL prefix | http://www.expasy.ch/cgi-bin/nicezyme.pl? |
Editorial Notes
- 2006-02-17 Sergei Egorov: redirect to EC:?
ESTLIB:
Database: EBI’s EST library identifier
ID example | 1200 |
---|
FANTOM_DB:
Database: Database of Functional Annotation of Mouse
URL: http://fantom.gsc.riken.go.jp/
ID example | 0610005A07 |
---|
FB:
Database: FlyBase
URL: http://flybase.bio.indiana.edu/
ID example | FBgn0000024 |
---|---|
URL prefix | http://fly.ebi.ac.uk:7081/.bin/fbidq.html? |
URL prefix | http://flybase.bio.indiana.edu/.bin/fbidq.html? |
Editorial Notes
- 2006-02-17 Sergei Egorov: two URLs, one service?
FLYBASE:
Database: Database of Genetic and molecular data of Drosophila
ID example | FBgn0000024 |
---|---|
URL prefix | http://flybase.bio.indiana.edu/.bin/fbidq.html? |
URL prefix | http://fly.ebi.ac.uk:7081/.bin/fbidq.html? |
Editorial Notes
- 2006-02-17 Sergei Egorov: two URLs, one service?
GABI:
Database: Network of Different Plant Genomic Research Projects
ID example | HA05J18 |
---|
GB:
Redirect to: INSD:
GDB:
Database: Human Genome Database accession numbers
URL: http://www.gdb.org/
ID example | G00-128-600 |
---|---|
URL prefix | http://www.gdb.org/gdb-bin/genera/accno?accessionNum= |
Editorial Notes
- 2006-02-17 Sergei Egorov: url example suggested GDB:306600 as ID format
GenBank:
Redirect to: INSD:
GeneDB:
Database: Curated gene database for Schizosaccharomyces pombe, Leishmania major and Trypanosoma brucei
ID example | SPCC285.16c |
---|---|
URL prefix | http://www.genedb.org/genedb/Search?organism=All%3A*&name= |
GeneDB_Gmorsitans:
Database: GeneDB_Gmorsitans
URL: http://www.genedb.org/glossina
ID example | Gmm-0142 |
---|---|
URL prefix | http://www.genedb.org/genedb/Search?organism=glossina&name= |
GeneDB_Lmajor:
Database: GeneDB_Lmajor
URL: http://www.genedb.org/leish
ID example | LM5.32 |
---|---|
URL prefix | http://www.genedb.org/genedb/Search?organism=leish&name= |
GeneDB_Pfalciparum:
Database: GeneDB_Pfalciparum
URL: http://www.genedb.org/malaria
ID example | PFD0755c |
---|---|
URL prefix | http://www.genedb.org/genedb/Search?organism=malaria&name= |
GeneDB_Spombe:
Database: GeneDB_Spombe
URL: http://www.genedb.org/pombe
ID example | SPAC890.04C |
---|---|
URL prefix | http://www.genedb.org/genedb/Search?organism=pombe&name= |
GeneDB_Tbrucei:
Database: GeneDB_Tbrucei
URL: http://www.genedb.org/tryp
ID example | Tb927.1.5250 |
---|---|
URL prefix | http://www.genedb.org/genedb/Search?organism=tryp&name= |
GeneID:
Database: Entrez Gene Database (replaces NCBI Locus Link)
URL: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene
Primary subject | gene |
---|---|
ID type | sequential identifier |
ID format | positive numeral |
ID example | 7157 |
ID subject | tumor protein p53 |
ID regexp | [1-9][0-9]* |
URL prefix | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids= |
RNEF property | LocusLink ID |
GermOnline:
Database: GermOnline
URL: http://www.germonline.org/
ID example | 140116 |
---|---|
URL prefix | http://germonline.unibas.ch/gene_page.php?orf_id= |
URL prefix | http://germonline.yeastgenome.org/gene_page.php?orf_id= |
URL prefix | http://germonline.biochem.s.u-tokyo.ac.jp/gene_page.php?orf_id= |
GI:
Database: GenInfo identifier, used as a unique sequence identifier for nucleotide and proteins
ID example | 1234567890 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: ID example is fake; cannot resolve GIs to URLs without knowing their type (protein/nucleotide)
GO:
Database: Gene Ontology Database
URL: http://www.geneontology.org/
Primary subject | concept |
---|---|
ID type | sequential identifier |
ID format | 7-digit numeral |
ID example | 0006915 |
ID subject | apoptosis |
ID regexp | [0-9]{7} |
URL prefix | http://godatabase.org/cgi-bin/go.cgi?query=GO: |
RNEF property | GO ID |
GO_REF:
Database: Gene Ontology Database references
ID example | 0000001 |
---|
GOA:
Database: Gene Ontology Annotation Database Identifier
URL: http://www.ebi.ac.uk/GOA/
ID example | P01100 |
---|
GR:
Database: Gramene: A Comparative Mapping Resource for Grains
ID example | P93436 |
---|---|
URL prefix | http://www.gramene.org/perl/protein_search?acc= |
GR_MUT:
Database: Gramene: A Comparative Mapping Resource for Grains
ID example | 659 |
---|---|
URL prefix | http://www.gramene.org/db/mutant/search_mutant?id= |
Editorial Notes
- 2006-02-17 Sergei Egorov: ID example may be fake; need to try GR:0060198
GR_protein:
Database: Gramene: A Comparative Mapping Resource for Grains.
ID example | 110916 |
---|---|
URL prefix | http://www.gramene.org/db/protein/protein_search?protein_id= |
GR_REF:
Database: Gramene: A Comparative Mapping Resource for Grains
ID example | 659 |
---|---|
URL prefix | http://www.gramene.org/perl/pub_search?ref_id= |
H-InvDB:
Database: H-Invitational Database
URL: http://www.h-invitational.jp
ID example | HIX0000001 |
---|
H-invDB_cDNA:
Database: H-invitational Database
URL: http://www.h-invitational.jp/
ID example | AK093148 |
---|---|
URL prefix | http://www.h-invdb.jbic.or.jp/soup/pub_Detail.pl?acc_id= |
URL prefix | http://www.jbirc.aist.go.jp/hinv/soup/pub_Detail.pl?acc_id= |
H-invDB_locus:
Database: H-invitational Database
URL: http://www.h-invitational.jp/
ID example | HIX0014446 |
---|---|
URL prefix | http://www.h-invdb.jbic.or.jp/soup/pub_Locus.pl?locus_id= |
URL prefix | http://www.jbirc.aist.go.jp/hinv/soup/pub_Locus.pl?locus_id= |
HAMAP:
Database: High-quality Automated and Manual Annotation of microbial Proteomes
URL: http://us.expasy.org/sprot/hamap/
ID example | MF_00031 |
---|---|
URL prefix | http://us.expasy.org/unirules/ |
HGNC:
Database: HUGO Gene Nomenclature Committee
URL: http://www.gene.ucl.ac.uk/nomenclature/
Primary subject | gene |
---|---|
ID type | sequential identifier |
ID format | positive numeral |
ID example | 11998 |
ID subject | tumor protein p53 |
ID regexp | [1-9][0-9]* |
URL prefix | http://www.gene.ucl.ac.uk/nomenclature/data/get_data.php?hgnc_id=HGNC: |
RNEF property | HGNC ID |
Editorial Notes
- 2006-02-17 Sergei Egorov: HGNC:ID as used by NCBI
HGNC_Symbol:
Database: HUGO Gene Nomenclature Committee
URL: http://www.gene.ucl.ac.uk/nomenclature/
Primary subject | gene |
---|---|
ID type | symbol |
ID format | a unique series of Latin (upper case in human) letters and Arabic numbers which usually is no longer than six characters in length; case-sensitive |
ID example | BRCA1 |
ID subject | breast cancer, early onset 1 |
URL prefix | http://www.gene.ucl.ac.uk/cgi-bin/nomenclature/searchgenes.pl?field=all_text&anchor=equals&symbol_search=Search&number=50&format=html&sortby=symbol&match= |
RNEF property | HUGO Symbol |
HSSP:
Database: Database of homology-derived secondary structure of proteins
URL: http://www.sander.ebi.ac.uk/hssp/
ID example | 12GS |
---|
IFO:
Database: Institute for Fermentation, Osaka
URL: http://www.ifo.or.jp/index_e.html
ID example | 3189 |
---|
IMGT_GENE-DB:
Database: Immunogenetics database, immunoglobulin and T-cell receptor genes
URL: http://imgt.cines.fr
NCBI db_xref | IMGT/GENE-DB |
---|---|
ID example | IGKC |
IMGT_HLA:
Database: Immunogenetics database, human MHC
URL: http://www.ebi.ac.uk/imgt/hla/
NCBI db_xref | IMGT/HLA |
---|---|
ID example | HLA00031 |
IMGT_LIGM:
Database: Immunogenetics database, immunoglobulins and T-cell receptors
URL: http://imgt.cines.fr
NCBI db_xref | IMGT/LIGM |
---|---|
ID example | U03895 |
InChI:
Primary subject | chemical compound |
---|---|
ID type | self-describing identifier |
ID format | canonicalized formula with ordered layers separated by / |
ID example | 1/C8H10N4O2/c1-10-4-9-6-5(10)7(13)12(3)8(14)11(6)2/h4H,1-3H3 |
ID subject | caffeine |
ID regexp | [-+/.,*;()?A-Za-z0-9]+ |
Editorial Notes
- 2006-02-17 Sergei Egorov: may need urlencoding
INSD:
Database: International Nucleotide Sequence Database Collaboration (GenBank, EMBL, DDBJ)
Primary subject | nucleotide sequence |
---|---|
ID type | accession number |
ID format | uppercase letters, followed by digits and optional .version suffix; e.g. LNNNNN, LLNNNNNN |
ID example | J01749 |
ID subject | Cloning vector pBR322, complete genome |
ID regexp | [A-Z]+[0-9]+([.][0-9]+)? |
URL prefix | http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val= |
URL prefix | http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id= |
URL prefix | http://arsa.ddbj.nig.ac.jp/arsa/ddbjSplSearch?KeyWord= |
RNEF property | GenBank ID |
IntAct:
Database: IntAct protein interaction database
URL: http://www.ebi.ac.uk/intact/
ID example | EBI-17086 |
---|---|
URL prefix | http://www.ebi.ac.uk/intact/search/do/search?searchString= |
InterPro:
Database: InterPro protein sequence database
URL: http://www.ebi.ac.uk/interpro/
NCBI db_xref | Interpro |
---|---|
ID example | IPR002928 |
URL prefix | http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac= |
IPI:
Database: International Protein Index
URL: http://www.ebi.ac.uk/IPI/IPIhelp.html
ID example | IPI00000005.1 |
---|
ISBN:
Database: International Standard Book Number
ID example | 0781702534 |
---|---|
URL prefix | http://my.linkbaton.com/get?lbCC=q&nC=q&genre=book&item= |
ISFinder:
Database: Insertion sequence elements database
ID example | ISA1083-2 |
---|
ISSN:
Database: International Standard Serial Number
URL: http://www.issn.org/
ID example | 1234-1231 |
---|
IUPHAR:
Database: The IUPHAR Compendium of Receptor Characterization and Classification
ID example | 2.1.CBD |
---|
JCM:
Database: Japan Collection of Microorganisms
URL: http://www.jcm.riken.go.jp/
ID example | 1339 |
---|
KEGG:
Redirect via regexp: pattern ([a-z]+)[:](.*) template KEGG_\1:\2
KEGG_COMPOUND:
Database: Kyoto Encyclopedia of Genes and Genomes
URL: http://www.genome.ad.jp/kegg/
Primary subject | chemical compound |
---|---|
ID type | accession number |
ID format | C followed by 5 digits |
ID example | C00074 |
ID subject | Phosphoenolpyruvate |
ID regexp | C[0-9]{5} |
URL prefix | http://www.genome.ad.jp/dbget-bin/www_bget?cpd: |
KEGG_cpd:
Redirect to: KEGG_COMPOUND:
KEGG_dr:
Redirect to: KEGG_DRUG:
KEGG_DRUG:
Database: Kyoto Encyclopedia of Genes and Genomes
URL: http://www.genome.ad.jp/kegg/
Primary subject | drug |
---|---|
ID type | accession number |
ID format | D followed by 5 digits |
ID example | D00245 |
ID subject | Bisacodyl (JP14/USP) |
ID regexp | D[0-9]{5} |
URL prefix | http://www.genome.ad.jp/dbget-bin/www_bget?dr: |
KEGG_ec:
Redirect to: EC:
KEGG_hsa:
Redirect to: GeneID:
KEGG_mmu:
Redirect to: GeneID:
KEGG_path:
Redirect to: KEGG_PATHWAY:
KEGG_PATHWAY:
Database: Kyoto Encyclopedia of Genes and Genomes
URL: http://www.genome.ad.jp/kegg/
Primary subject | pathway |
---|---|
ID type | accession number |
ID format | lowercase letters, followed by 5 digits |
ID example | ot00020 |
ID subject | Citrate cycle (TCA cycle) |
ID regexp | [a-z]+[0-9]{5} |
URL prefix | http://www.genome.ad.jp/dbget-bin/www_bget?path: |
URL prefix | http://www.genome.ad.jp/dbget-bin/www_bget?path: |
KEGG_rno:
Redirect to: GeneID:
LIGAND:
Database: KEGG LIGAND Database
URL: http://www.genome.ad.jp/kegg/docs/upd_ligand.html#COMPOUND
ID example | 1.1.1.1 |
---|---|
URL prefix | http://www.genome.ad.jp/dbget-bin/www_bget?ec: |
URL prefix | http://www.genome.ad.jp/dbget-bin/www_bget?cpd: |
Editorial Notes
- 2006-02-17 Sergei Egorov: needs editing or redirection
LocusID:
Redirect to: GeneID:
MaizeGDB:
Database: MaizeGDB
ID example | 881225 |
---|---|
URL prefix | http://www.maizegdb.org/cgi-bin/id_search.cgi?id= |
MaizeGDB_Locus:
Database: MaizeGDB
ID example | ZmPK1 |
---|---|
URL prefix | http://www.maizegdb.org/cgi-bin/displaylocusresults.cgi?term=? |
MEDLINE:
Database: The Medline literature database
ID example | 20572430 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: superseded by PubMed (see PMID:)
MEROPS:
Database: MEROPS – the Peptidase Database
URL: http://merops.sanger.ac.uk/
ID example | A01.001 |
---|
MEROPS_fam:
Database: MEROPS: The Peptidase Database
URL: http://merops.sanger.ac.uk/
ID example | M18 |
---|---|
URL prefix | http://merops.sanger/ac/uk/famcards/ |
Editorial Notes
- 2006-02-17 Sergei Egorov: check if .htm needs to be appended to URLs
MeSH:
Database: Medical Subject Headings
URL: http://www.nlm.nih.gov/mesh/2005/MBrowser.html
ID example | mitosis |
---|---|
URL prefix | http://www.nlm.nih.gov/cgi/mesh/2005/MB_cgi?mode=&term= |
Editorial Notes
- 2006-02-17 Sergei Egorov: need to preserve case and urlencode commas, spaces, …?
MetaCyc:
Database: The Metabolic Encyclopedia of metabolic and other pathways
URL: http://metacyc.org/
ID example | GLUTDEG-PWY |
---|---|
URL prefix | http://biocyc.org:1555/META/new-image?object= |
MGD:
Database: Mouse Genome Database
URL: http://www.informatics.jax.org/
ID example | Adcy9 |
---|---|
URL prefix | http://www.informatics.jax.org/searches/marker.cgi? |
MGI:
Database: Mouse Genome Informatics
URL: http://www.informatics.jax.org/
Primary subject | gene |
---|---|
ID type | sequential identifier |
ID format | positive numeral |
ID example | 98834 |
ID subject | transformation related protein 53 |
ID regexp | [1-9][0-9]* |
URL prefix | http://www.informatics.jax.org/searches/accession_report.cgi?id= |
URL prefix | http://www.informatics.jax.org/searches/accession_report.cgi?id=MGI: |
RNEF property | MGI ID |
MIM:
Redirect to: OMIM:
Editorial Notes
- 2006-02-17 Sergei Egorov: MIM: is NCBI usage
MIPS_funcat:
Database: MIPS Functional Catalogue
URL: http://mips.gsf.de/proj/funcatDB/
ID example | 11.02 |
---|---|
URL prefix | http://mips.gsf.de/cgi-bin/proj/funcatDB/search_advanced.pl?action=2&wert= |
MO:
Database: The MGED Ontology
URL: http://mged.sourceforge.net/ontologies/MGEDontology.php
ID example | Action |
---|---|
URL prefix | http://mged.sourceforge.net/ontologies/MGEDontology.php# |
NASC_code:
Database: Nottingham Arabidopsis Stock Centre Seeds Database
ID example | N3371 |
---|---|
URL prefix | http://seeds.nottingham.ac.uk/NASC/stockatidb.lasso?code= |
NCBI_GB:
Redirect to: INSD:
NCBI_GP:
Database: NCBI GenPept
URL: http://www.ncbi.nlm.nih.gov/
ID example | EAL72968 |
---|---|
URL prefix | http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val= |
NCBI_NM:
Database: NCBI RefSeq
URL: http://www.ncbi.nlm.nih.gov/
ID example | 123456 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: ID example is fake
NCBI_NP:
Database: NCBI RefSeq
URL: http://www.ncbi.nlm.nih.gov/
ID example | 123456 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: ID example is fake
NextDB:
Database: Nematode Expression Pattern DataBase
URL: http://nematode.lab.nig.ac.jp/
ID example | CELK01662 |
---|
niaEST:
Database: NIA Mouse cDNA Project
URL: http://lgsun.grc.nia.nih.gov/cDNA/cDNA.html
ID example | L0304H12-3 |
---|
OMIM:
Database: Online Mendelian Inheritance in Man database
URL: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM
Primary subject | gene |
---|---|
Subject | gene-related genetic disorders |
ID type | sequential identifier |
ID format | positive numeral |
ID example | 191170 |
ID subject | TUMOR PROTEIN p53 |
ID regexp | [1-9][0-9]* |
URL prefix | http://www3.ncbi.nlm.nih.gov/htbin-post/Omim/dispmim? |
URL prefix | http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id= |
RNEF property | OMIM ID |
PDB:
Database: Protein Data Bank
ID example | 1A4U |
---|---|
URL prefix | http://www.rcsb.org/pdb/cgi/explore.cgi?pid=223051005992697&pdbId= |
Pfam:
Database: Pfam: Protein families database of alignments and HMMs
URL: http://www.sanger.ac.uk/Software/Pfam/
ID example | PF00046 |
---|---|
URL prefix | http://www.sanger.ac.uk/cgi-bin/Pfam/getacc? |
PfamB:
Database: Pfam-B supplement to Pfam
URL: http://www.sanger.ac.uk/Software/Pfam/
ID example | PB014624 |
---|
PGN:
Database: Plant Genome Network
ID example | aam01-1ms3-a05 |
---|
PIR:
Database: Protein Information Resource
URL: http://pir.georgetown.edu/
Primary subject | protein |
---|---|
ID type | accession number |
ID format | uppercase letters, followed by digits |
ID example | S02192 |
ID subject | cellular tumor antigen p53 – rat |
ID regexp | [A-Z]+[0-9]+ |
URL prefix | http://pir.georgetown.edu/cgi-bin/pirwww/nbrfget?uid= |
RNEF property | PIR ID |
PIRSF:
Database: PIR Superfamily Classification System
URL: http://pir.georgetown.edu/pirsf/
ID example | SF002327 |
---|---|
URL prefix | http://pir.georgetown.edu/cgi-bin/ipcSF?id= |
PMID:
Database: PubMed
URL: http://pubmed.gov/
Primary subject | article |
---|---|
ID type | sequential identifier |
ID format | positive numeral |
ID example | 16446403 |
ID subject | Mol Cancer Res. 2006 Jan;4(1):15-25. |
ID regexp | [1-9][0-9]* |
URL prefix | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids= |
PO:
Database: Plant Ontology Consortium Database
URL: http://www.plantontology.org/
ID example | 0009004 |
---|---|
URL prefix | http://www.plantontology.org/amigo/go.cgi?action=query&view=query&search_constraint=terms&query= |
Editorial Notes
- 2006-02-17 Sergei Egorov: template may have PO: before the ID?
Pompep:
Database: Schizosaccharomyces pombe protein data
ID example | SPAC890.04C |
---|
PRINTS:
Database: PRINTS compendium of protein fingerprints
URL: http://umber.sbs.man.ac.uk/dbbrowser/PRINTS/
ID example | PR00025 |
---|---|
URL prefix | http://umber.sbs.man.ac.uk/cgi-bin/dbbrowser/PRINTS/DoPRINTS.pl?cmd_a=Display&qua_a=none&fun_a=Text&qst_a= |
ProDom:
Database: ProDom protein domain families automatically generated from Swiss-Prot and TrEMBL
URL: http://prodes.toulouse.inra.fr/prodom/current/html/home.php
ID example | PD000001 |
---|---|
URL prefix | http://prodes.toulouse.inra.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query= |
Prosite:
Database: Prosite. Database of protein families and domains
URL: http://www.expasy.ch/prosite/
ID example | PS00365 |
---|---|
URL prefix | http://www.expasy.ch/cgi-bin/prosite-search-ac? |
protein_id:
Redirect to: INSD:
PSEUDO:
Database: EMBL pseudo protein identifier
ID example | CAC44644.1 |
---|
PubChem_Compound:
Database: NCBI PubChem database of chemical structures
URL: http://pubchem.ncbi.nlm.nih.gov/
Primary subject | chemical compound |
---|---|
ID type | sequential identifier |
ID format | positive numeral |
ID example | 2519 |
ID subject | Caffeine |
ID regexp | [1-9][0-9]* |
URL prefix | http://http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pccompound&term= |
URL prefix | http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid= |
PubChem_Substance:
Database: NCBI PubChem database of chemical substances
URL: http://pubchem.ncbi.nlm.nih.gov/
Primary subject | chemical substance |
---|---|
ID type | sequential identifier |
ID format | positive numeral |
ID example | 199601 |
ID subject | Coffee |
ID regexp | [1-9][0-9]* |
URL prefix | http://http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term= |
URL prefix | http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid= |
RATMAP:
Database: Rat Genome Database
ID example | 5 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: fake ID?
Reactome:
Database: Reactome human pathway database
ID example | 70635 |
---|---|
URL prefix | http://www.reactome.org/cgi-bin/eventbrowser?DB=gk_current&ID= |
REBASE:
Database: REBASE, The Restriction Enzyme Database
URL: http://rebase.neb.com/rebase/rebase.html
ID example | EcoRI |
---|---|
URL prefix | http://rebase.neb.com/rebase/enz/ |
Editorial Notes
- 2006-02-17 Sergei Egorov: template may need to add .html after the ID: use ere?
RESID:
Database: RESID Database of Protein Modifications
ID example | AA0062 |
---|
RGD:
Database: Rat Genome Database
URL: http://rgd.mcw.edu/
Primary subject | gene |
---|---|
ID type | sequential identifier |
ID format | positive numeral |
ID example | 3889 |
ID subject | tumor protein p53 |
ID regexp | [1-9][0-9]* |
URL prefix | http://rgd.mcw.edu/tools/genes/genes_view.cgi?id= |
RNEF property | RGD ID |
RGDID:
Redirect to: RGD:
RiceGenes:
Database: Rice database accession numbers
ID example | AA231856 |
---|
RNAmods:
Database: The RNA Modification Database
URL: http://medlib.med.utah.edu/RNAmods/
ID example | 037 |
---|---|
URL prefix | http://medlib.med.utah.edu/cgi-bin/rnashow.cgi? |
RZPD:
Database: Resource Centre Primary Database Clone Identifiers
URL: http://www.rzpd.de/
ID example | IMAGp998I142450Q6 |
---|
SGD:
Database: Saccharomyces Genome Database
URL: http://www.yeastgenome.org/
ID example | S000006169 |
---|---|
URL prefix | http://db.yeastgenome.org/cgi-bin/locus.pl?dbid= |
SGD_LOCUS:
Database: Saccharomyces Genome Database
URL: http://www.yeastgenome.org/
ID example | GAL4 |
---|---|
URL prefix | http://db.yeastgenome.org/cgi-bin/locus.pl?locus= |
Editorial Notes
- 2006-02-17 Sergei Egorov: another ID example: YEL001C
SGD_REF:
Database: Saccharomyces Genome Database
URL: http://www.yeastgenome.org/
ID example | S000049602 |
---|---|
URL prefix | http://db.yeastgenome.org/cgi-bin/reference/reference.pl?dbid= |
SMART:
Database: Simple Modular Architecture Research Tool
URL: http://smart.embl-heidelberg.de/
ID example | SM00005 |
---|---|
URL prefix | http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN= |
SoyBase:
Database: Glycine max Genome Database
URL: http://soybase.agron.iastate.edu/
ID example | Satt005 |
---|
STKECM:
Redirect via regexp: pattern stkecm_([A-Z]+)_([0-9]+) template STKECM_\1:\2
STKECM_CMC:
Database: Science’s STKE Connections Map
URL: http://stke.sciencemag.org/
Primary subject | chemical substance |
---|---|
ID type | sequential identifier |
ID format | positive numeral |
ID example | 15493 |
ID subject | Acetylcholinesterase (AChE) |
ID regexp | [1-9][0-9]* |
URL prefix | http://stke.sciencemag.org/cgi/cm/stkecm;CMC_ |
STKECM_CMP:
Database: Science’s STKE Connections Map
URL: http://stke.sciencemag.org/
Primary subject | pathway |
---|---|
ID type | sequential identifier |
ID format | positive numeral |
ID example | 10827 |
ID subject | JNK MAPK Pathway |
ID regexp | [1-9][0-9]* |
URL prefix | http://stke.sciencemag.org/cgi/cm/stkecm;CMP_ |
SubtiList:
Database: Bacillus subtilis genome sequencing project
URL: http://genolist.pasteur.fr/SubtiList/
ID example | BG10001 |
---|
SUBTILISTG:
Database: Bacillus subtilis Genome Sequence Project
URL: http://genolist.pasteur.fr/SubtiList/
ID example | accC |
---|
TAIR:
Database: The Arabidopsis Information Resource
URL: http://www.arabidopsis.org/
ID example | gene:2062713 |
---|---|
URL prefix | http://www.arabidopsis.org/servlets/TairObject?accession= |
Editorial Notes
- 2006-02-17 Sergei Egorov: should gene: in the ID be part of the template?
taxon:
Database: NCBI’s taxonomic identifier
URL: http://www.ncbi.nlm.nih.gov/Taxonomy/tax.html
ID example | 4932 |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: this needs to be linked ASAP
TC:
Database: The Transport Protein Database
URL: http://tcdb.ucsd.edu/tcdb/
ID example | 9.A.4.1.1 |
---|---|
URL prefix | http://tcdb.ucsd.edu/tcdb/tcprotein.php?substrate= |
TGD_LOCUS:
Database: Tetrahymena Genome Database
ID example | PDD1 |
---|---|
URL prefix | http://db.ciliate.org/cgi-bin/locus.pl?locus= |
Editorial Notes
- 2006-02-17 Sergei Egorov: another ID example: U66363
TGD_REF:
Database: Tetrahymena Genome Database
ID example | T000005818 |
---|---|
URL prefix | http://db.ciliate.org/cgi-bin/reference/reference.pl?dbid= |
TIGR_Ath1:
Database: The Institute for Genomic Research, Arabidopsis thaliana database
URL: http://www.tigr.org/tdb/e2k1/ath1/ath1.shtml
ID example | At3g01440 |
---|---|
URL prefix | http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=ath1&orf= |
TIGR_CMR:
Database: The Institute for Genomic Research, Comprehensive Microbial Resource
URL: http://www.tigr.org/
ID example | VCA0557 |
---|---|
URL prefix | http://www.tigr.org/tigr-scripts/CMR2/GenePage.spl?locus= |
TIGR_EGAD:
Database: The Institute for Genomic Research, EGAD database
URL: http://www.tigr.org/
ID example | 74462 |
---|---|
URL prefix | http://www.tigr.org/tigr-scripts/CMR2/ht_report.spl?prot_id= |
TIGR_GenProp:
Database: The Institute for Genomic Research, Genome Properties
URL: http://www.tigr.org/
ID example | GenProp0120 |
---|---|
URL prefix | http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop_acc= |
TIGR_Pfa1:
Database: The Institute for Genomic Research, Plasmodium falciparum database
URL: http://www.tigr.org/tdb/e2k1/pfa1/pfa1.shtml
ID example | PFB0010w |
---|---|
URL prefix | http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=pfa1&orf= |
TIGR_REF:
ID example | GO_ref |
---|
Editorial Notes
- 2006-02-17 Sergei Egorov: is this ID real?
TIGR_Tba1:
Database: The Institute for Genomic Research, Trypanosoma brucei database
URL: http://www.tigr.org/tdb/e2k1/tba1/
ID example | 25N14.10 |
---|---|
URL prefix | http://www.tigr.org/tigr-scripts/euk_manatee/shared/ORF_infopage.cgi?db=tba1&orf= |
TIGR_TGI:
Database: The Institute for Genomic Research, TIGR Gene Index
URL: http://www.tigr.org/
ID example | Cattle_TC123931 |
---|---|
URL prefix | http://www.tigr.org/tigr-scripts/nhgi_scripts/tc_report.pl?tc=? |
TIGR_TIGRFAMS:
Database: The Institute for Genomic Research, TIGRFAMs HMM collection
URL: http://www.tigr.org/
ID example | TIGR00254 |
---|---|
URL prefix | http://www.tigr.org/tigr-scripts/CMR2/hmm_report.spl?acc= |
TrEMBL:
Database: UniProtKB-TrEMBL, a computer-annotated protein sequence database supplementing UniProtKB and containing the translations of all coding sequences (CDS) present in the EMBL Nucleotide Sequence Database but not yet integrated in UniProtKB/Swiss-Prot
ID example | O31124 |
---|---|
URL prefix | http://www.ebi.uniprot.org/entry/ |
UM-BBD_enzymeID:
Database: The University of Minnesota Biocatalysis/Biodegradation Database
URL: http://umbbd.ahc.umn.edu/index.html
ID example | e0413 |
---|---|
URL prefix | http://umbbd.ahc.umn.edu:8007/umbbd/servlet/pageservlet?ptype=ep&enzymeID= |
UM-BBD_pathwayID:
Database: The University of Minnesota Biocatalysis/Biodegradation Database
URL: http://umbbd.ahc.umn.edu/index.html
ID example | acr |
---|---|
URL prefix | http://umbbd.ahc.umn.edu/ |
Editorial Notes
- 2006-02-17 Sergei Egorov: may need to turn acr into acr/acr_map.html — use ere?
UniGene:
Database: NCBI’s UniGene database
URL: http://www.ncbi.nih.gov/UniGene
Primary subject | cluster of nucleotide sequences |
---|---|
ID type | sequential identifier (organism-specific) |
ID format | 2/3-letter organism abbreviation followed by dot and positive numeral |
ID example | Hs.408312 |
ID subject | p53 cluster |
ID regexp | ([A-Z][a-z][a-z]?)[.]([1-9][0-9]*) |
URL regexp | http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=\1\&CID=\2 |
URL prefix | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene&cmd=search&term= |
RNEF property | Unigene ID |
UNILIB:
Database: Unified Library Database, a library-level view of the EST and SAGE libraries present in dbEST, UniGene and SAGEmap
ID example | 1002 |
---|
UniParc:
Database: UniProt Archive; a non-redundant archive of protein sequences extracted from Swiss-Prot, TrEMBL, PIR-PSD, EMBL, Ensembl, IPI, PDB, RefSeq, FlyBase, WormBase, European Patent Office, United States Patent and Trademark Office, and Japanese Patent Office
URL: http://www.ebi.ac.uk/uniparc/
ID example | UPI000000000A |
---|---|
URL prefix | http://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id= |
UniProt:
Database: The Universal Protein Knowledgebase, a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR
NCBI db_xref | UniProtKB/Swiss-Prot |
---|---|
Primary subject | protein |
ID type | accession number |
ID format | 6 alphanumerical characters |
ID example | P08251 |
ID subject | Sodium/potassium-transporting ATPase beta-1 chain |
ID regexp | [OPQ][0-9][A-Z0-9][A-Z0-9][A-Z0-9][0-9] |
URL prefix | http://www.ebi.uniprot.org/entry/ |
RNEF property | Swiss-Prot Accession |
UniProtKB_Swiss-Prot:
Database: section of the UniProt Knowledgebase, containing annotated records, which include curator-evaluated computational analysis, as well as, information extracted from the literature
NCBI db_xref | UniProtKB/Swiss-Prot |
---|---|
ID example | P12345 |
Editorial Notes
- 2006-02-17 Sergei Egorov: redirect to UniProt?
UniProtKB_TrEMBL:
Database: section of the UniProt Knowledgebase, containing computationally analysed records waiting for full manual annotation
NCBI db_xref | UniProtKB/TrEMBL |
---|---|
ID example | Q00177 |
VBASE2:
Database: Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse
URL: http://www.dnaplot.de/vbase2/vbase2.php
ID example | humIGKV165 |
---|
WB:
Database: WormBase, database of nematode biology
ID example | lin-12 |
---|---|
URL prefix | http://www.wormbase.org/db/get?class=Locus;name= |
WB_REF:
Database: WormBase, database of nematode biology
ID example | cgc467 |
---|---|
URL prefix | http://www.wormbase.org/db/misc/paper?name= |
Editorial Notes
- 2006-02-17 Sergei Egorov: may need to put %5Bcgc467%5D;class=Paper after the template — use ere?
WorfDB:
Database: C. elegans ORFeome cloning project
URL: http://worfdb.dfci.harvard.edu/
ID example | pos-1 |
---|
WormBase:
Database: Caenorhabditis elegans Genome Database
ID example | R13H7 |
---|
WP:
Database: Wormpep, database of proteins of C. elegans
ID example | CE25104 |
---|---|
URL prefix | http://www.wormbase.org/db/get?class=Protein;name= |
Editorial Notes
- 2006-02-17 Sergei Egorov: may need to put WP%3A between the template and the ID — add to template?
ZFIN:
Database: The Zebrafish Information Network
URL: http://zfin.org/
ID example | ZDB-GENE-990415-103 |
---|---|
URL prefix | http://zfin.org/cgi-bin/ZFIN_jump?record= |