Copyright © 2006 Sergei Egorov
GO.xrf_abbs Copyright © 1999-2006 the Gene Ontology Consortium
OWL metadata & format Copyright © 2005 Richard Newman and Ian Davis
This work is licensed under a Creative Commons License.
This vocabulary defines terms used to describe Life Science Record Name (LSRN) Schemas and related metadata. An LSRN Schema defines a prefix (e.g. GO:), the format of the prefix-dependent record identifier, and the associated metadata.
This vocabulary is based on Gene Ontology Consortium's GO.xrf_abbs file format. Alterations were made to clarify ambiguous properies and make the format more suitable for automatic processing by LSRN resolver.
This vocabulary's metadata and format are based upon those of the FRBR-core vocabulary by Richard Newman and Ian Davis, available under CC license. The same license type is used to license this work.
The URI for this vocabulary is
http://www.lsrn.org/lsrn/schema.owl#
When used in XML documents the suggested prefix is lsrs
Each class or property in the vocabulary has a URI constructed by appending a term name to the vocabulary URI. For example:
http://www.lsrn.org/lsrn/schema.owl#database
http://www.lsrn.org/lsrn/schema.owl#Schema
The term name for a class always starts with an uppercase character. Where the term name is comprised of multiple concatenated words, the leading character of each word will be an uppercase character. For example:
Schema
The term name for a property always starts with a lowercase character. Where the term name is comprised of multiple concatenated words, the words will be separated by underscore. For example:
database
database_url
This vocabulary defines one class and 17 properties .
Term Name | Type | Definition |
---|---|---|
Schema | class | A schema for Life Science Record Names. |
ariadne_rnef_property | property | Ariadne Genomics RNEF property name for the schema. |
database | property | The name of the database storing the record, e.g. 'Gene Ontology'. |
database_url | property | Web address of the database storing the record. |
id_example | property | Example of database ID for the record (sans prefix). |
id_example_subject | property | Subject for the example ID. |
id_format | property | Free-text format description, e.g. 'positive numeral'. |
id_pattern_ere | property | POSIX-style extended regexp pattern for database IDs, e.g. '[A-Z][0-9]+'. |
id_type | property | ID type, e.g. 'sequential identifier' or 'accession number'. |
ncbi_db_xref | property | NCBI db_xref key for the schema, if different from schema prefix. |
record_primary_subject | property | Primary subject of database record, e.g. 'gene'. |
record_subject | property | Secondary subject of database record, e.g. 'genetic disorders'. |
redirect_to_ere | property | A regexp template for replacement LSRN. |
redirect_to_prefix | property | Another prefix to be used in place of the current one, e.g. 'INSD:'. |
url_template_ere | property | A regexp template to form a URL. |
url_template_prefix | property | A URL prefix to form a complete URL. |
Definition: A schema for Life Science Record Names.
A member of this class describes the subject of a record, format of its name (prefix and prefix-dependent part), and its mapping to other identifiers and locators (URIs, URLs). Members of this class should have unique URIs in http://www.lsrn.org/lsrn/registry.rdf# namespace; their RDF identifiers serve as LSRN prefixes (e.g. http://www.lsrn.org/lsrn/registry.rdf#GO defines the GO: prefix and GO schema).
URI: | http://www.lsrn.org/lsrn/schema.owl#Schema |
---|---|
Label: | LSRN Schema |
Definition: [The value of this property is] Ariadne Genomics RNEF property name for the schema.
This property is used to facilitate mapping between LSRN schemas and external ontology.
URI: | http://www.lsrn.org/lsrn/schema.owl#ariadne_rnef_property |
---|---|
Label: | RNEF property name |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] The name of the database storing the record, e.g. 'Gene Ontology'.
URI: | http://www.lsrn.org/lsrn/schema.owl#database |
---|---|
Label: | source database |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] Web address of the database storing the record.
This should be a link to the database's home page or some other good starting point for exploration of the database's metadata and content.
URI: | http://www.lsrn.org/lsrn/schema.owl#database_url |
---|---|
Label: | database URL |
Domain | lsrs:Schema |
Range | xsd:anyURI |
Definition: [The value of this property is] Example of database ID for the record (sans prefix).
This property should be a real ID. Together with the corresponding id_example_subject, it is used to check the LSRN registry for dead links.
URI: | http://www.lsrn.org/lsrn/schema.owl#id_example |
---|---|
Label: | example of ID |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] Subject for the example ID.
This property is used together with id_example to check the LSRN registry for dead links. For each URL template, a URL is produced by substituting id_example, and the resulting resource is retrieved and checked for literal presence of the id_example_subject string.
URI: | http://www.lsrn.org/lsrn/schema.owl#id_example_subject |
---|---|
Label: | subject of ID example |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] Free-text format description, e.g. 'positive numeral'.
In the future, this property will be accompanied by a reference to a term from a suitable ontology of common syntaxes for database identifiers. To simplify the transition, please try to use one of the existing values before inventing your own.
URI: | http://www.lsrn.org/lsrn/schema.owl#id_format |
---|---|
Label: | format of a database ID |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] POSIX-style extended regexp pattern for database IDs, e.g. '[A-Z][0-9]+'.
This property should be a valid POSIX ERE (extended regular expression). It should be present if either redirect_to_ere or url_template_ere properties are specified. Group subexpressions ised in id_pattern_ere can be referred to via \1 .. \9 substitution patterns in the template properties.
URI: | http://www.lsrn.org/lsrn/schema.owl#id_pattern_ere |
---|---|
Label: | regexp for database ID |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] ID type, e.g. 'sequential identifier' or 'accession number'.
In the future, this property will be accompanied by a reference to a term from a suitable ontology of common maintenance models for database identifiers. To simplify the transition, please try to use one of the existing values before inventing your own.
URI: | http://www.lsrn.org/lsrn/schema.owl#id_type |
---|---|
Label: | type of a database ID |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] NCBI db_xref key for the schema, if different from schema prefix.
This property is used to preserve the original NCBI's db_xref key if it contains characters which cannot be used in LSRN schema names.
URI: | http://www.lsrn.org/lsrn/schema.owl#ncbi_db_xref |
---|---|
Label: | NCBI db_xref key |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] Primary subject of database record, e.g. 'gene'.
In the future, this property will be accompanied by a reference to a term from a suitable ontology of common subjects of life science database records. To simplify the transition, please try to use one of the existing values before inventing your own.
URI: | http://www.lsrn.org/lsrn/schema.owl#record_primary_subject |
---|---|
Label: | primary subject of db record |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] Secondary subject of database record, e.g. 'genetic disorders'.
In the future, this property will be accompanied by a reference to a term from a suitable ontology of common subjects of life science database records. To simplify the transition, please try to use one of the existing values before inventing your own.
URI: | http://www.lsrn.org/lsrn/schema.owl#record_subject |
---|---|
Label: | secondary subject of db record |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] A regexp template for replacement LSRN.
This property should be a template used with id_pattern_ere regexp pattern. The template is copied, making substitutions according to the regexp match performed using id_pattern_ere. Each instance of '&' in template is replaced by the entire identifier. Each instance of '\n', where n is a digit between 1 and 9, is replaced by the substring corresponding to parenthesized group in id_pattern_ere. To get a literal '&' or '\n', prefix it in the template with '\'; to get a literal '\' preceding '&' or '\n', prefix it with another '\'.
URI: | http://www.lsrn.org/lsrn/schema.owl#redirect_to_ere |
---|---|
Label: | redirect via regexp |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] Another prefix to be used in place of the current one, e.g. 'INSD:'.
This property is used by LSRN Resolver service to process alternative or common names and propose their canonical variants. The replacement LSRN is formed by appending the identifier part to the redirect_to_prefix property, which should end in colon.
URI: | http://www.lsrn.org/lsrn/schema.owl#redirect_to_prefix |
---|---|
Label: | redirect to prefix |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] A regexp template to form a URL.
This property is used by LSRN Resolver to form a URL for the record. The template is copied, making substitutions according to the regexp match performed using id_pattern_ere. Each instance of '&' in template is replaced by the entire identifier. Each instance of '\n', where n is a digit between 1 and 9, is replaced by the substring corresponding to parenthesized group in id_pattern_ere. To get a literal '&' or '\n', prefix it in the template with '\'; to get a literal '\' preceding '&' or '\n', prefix it with another '\'.
URI: | http://www.lsrn.org/lsrn/schema.owl#url_template_ere |
---|---|
Label: | URL template for ID regexp |
Domain | lsrs:Schema |
Range | xsd:string |
Definition: [The value of this property is] A URL prefix to form a complete URL.
This property is used by LSRN Resolver to form a URL for the record. URLs are formed by appending the identifier part to each url_template_prefix property.
URI: | http://www.lsrn.org/lsrn/schema.owl#url_template_prefix |
---|---|
Label: | URL template prefix |
Domain | lsrs:Schema |
Range | xsd:string |
The schema included here is informational only. The normative schema can be found at http://www.lsrn.org/lsrn/schema.owl
<rdf:RDF
xmlns:lsrs="http://www.lsrn.org/lsrn/schema.owl#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
xmlns:vann="http://purl.org/vocab/vann/"
xmlns:cc="http://web.resource.org/cc/"
xmlns:dctype="http://purl.org/dc/dcmitype/"
xmlns:dct="http://purl.org/dc/terms/"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xml:base="http://www.lsrn.org/lsrn/schema.owl">
<owl:Ontology
rdf:about=""
dc:date="2006-02-12">
<dc:title xml:lang="en">LSRN Schema Descriptions</dc:title>
<rdfs:comment xml:lang="en">
This vocabulary defines terms used to describe Life Science Record
Name (LSRN) Schemas and related metadata. LSRN Schema defines a prefix
(e.g. GO:), the format of the prefix-dependent record identifier, and
the associated metadata.
</rdfs:comment>
<rdfs:comment xml:lang="en">
This vocabulary is based on Gene Ontology Consortium's GO.xrf_abbs file
format. Alterations were made to clarify ambiguous properies and make
the format more suitable for automatic processing by LSRN resolver.
</rdfs:comment>
<rdfs:comment xml:lang="en">
This vocabulary's metadata and format are based upon those of the
FRBR-core vocabulary by Richard Newman and Ian Davis, available under CC
license. The same license type is used to license this work.
</rdfs:comment>
<dc:identifier>http://www.lsrn.org/lsrn/schema</dc:identifier>
<dct:isVersionOf rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:seeAlso rdf:resource="http://www.geneontology.org/GO.usage.shtml#synonyms"/>
<rdfs:seeAlso rdf:resource="http://www.geneontology.org/doc/GO.xrf_abbs"/>
<rdfs:seeAlso rdf:resource="http://vocab.org/frbr/core"/>
<dc:creator>Sergei Egorov <esl@ariadnegenomics.com></dc:creator>
<dc:rights>Copyright © 2006 Sergei Egorov</dc:rights>
<dc:rights>GO.xrf_abbs Copyright © 1999-2006 the Gene Ontology Consortium</dc:rights>
<dc:rights>OWL metadata&format Copyright © 2005 Richard Newman and Ian Davis</dc:rights>
<vann:preferredNamespaceUri>http://www.lsrn.org/lsrn/schema.owl#</vann:preferredNamespaceUri>
<vann:preferredNamespacePrefix>lsrs</vann:preferredNamespacePrefix>
<dct:hasFormat>
<dctype:Text rdf:about="http://www.lsrn.org/lsrn/schema.html">
<dc:format>
<dct:IMT>
<rdf:value>text/html</rdf:value>
<rdfs:label xml:lang="en">HTML</rdfs:label>
</dct:IMT>
</dc:format>
</dctype:Text>
</dct:hasFormat>
<dct:hasFormat>
<dctype:Text rdf:about="http://www.lsrn.org/lsrn/schema.owl">
<dc:format>
<dct:IMT>
<rdf:value>application/rdf+xml</rdf:value>
<rdfs:label xml:lang="en">RDF</rdfs:label>
</dct:IMT>
</dc:format>
</dctype:Text>
</dct:hasFormat>
<skos:example rdf:resource="./registry.rdf"/>
<dct:issued>2006-02-12</dct:issued>
<skos:changeNote
rdf:value="Added OWL ontology metadata"
dc:date="2006-02-12"
dc:creator="Sergei Egorov"/>
<skos:historyNote
rdf:value="First version"
dc:date="2006-02-12"
dc:creator="Sergei Egorov"/>
</owl:Ontology>
<cc:Work rdf:about="">
<cc:license rdf:resource="http://creativecommons.org/licenses/by/2.0/uk/"/>
</cc:Work>
<cc:License rdf:about="http://creativecommons.org/licenses/by/2.0/uk/">
<cc:permits rdf:resource="http://web.resource.org/cc/Reproduction"/>
<cc:permits rdf:resource="http://web.resource.org/cc/Distribution"/>
<cc:requires rdf:resource="http://web.resource.org/cc/Notice"/>
<cc:requires rdf:resource="http://web.resource.org/cc/Attribution"/>
<cc:permits rdf:resource="http://web.resource.org/cc/DerivativeWorks"/>
</cc:License>
<owl:ObjectProperty rdf:about="http://purl.org/dc/elements/1.1/format"/>
<owl:ObjectProperty rdf:about="http://purl.org/dc/terms/hasFormat"/>
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/isVersionOf"/>
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/replaces"/>
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/type"/>
<owl:DatatypeProperty rdf:about="http://purl.org/dc/elements/1.1/rights"/>
<owl:DatatypeProperty rdf:about="http://purl.org/dc/elements/1.1/date"/>
<owl:DatatypeProperty rdf:about="http://purl.org/dc/elements/1.1/identifier"/>
<owl:DatatypeProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
<owl:DatatypeProperty rdf:about="http://purl.org/dc/elements/1.1/title"/>
<owl:AnnotationProperty rdf:about="http://purl.org/vocab/vann/preferredNamespacePrefix"/>
<owl:AnnotationProperty rdf:about="http://purl.org/vocab/vann/preferredNamespaceUri"/>
<owl:AnnotationProperty rdf:about="http://purl.org/vocab/vann/changes"/>
<owl:DatatypeProperty rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#value"/>
<owl:Class rdf:about="http://web.resource.org/cc/License"/>
<owl:Class rdf:about="http://web.resource.org/cc/Permission"/>
<owl:Class rdf:about="http://web.resource.org/cc/Requirement"/>
<owl:ObjectProperty rdf:about="http://web.resource.org/cc/permits"/>
<owl:ObjectProperty rdf:about="http://web.resource.org/cc/requires"/>
<owl:AnnotationProperty rdf:about="http://web.resource.org/cc/license"/>
<cc:Permission rdf:about="http://web.resource.org/cc/Reproduction"/>
<cc:Permission rdf:about="http://web.resource.org/cc/Distribution"/>
<cc:Requirement rdf:about="http://web.resource.org/cc/Notice"/>
<cc:Requirement rdf:about="http://web.resource.org/cc/Attribution"/>
<cc:Permission rdf:about="http://web.resource.org/cc/DerivativeWorks"/>
<owl:Class rdf:about="http://www.lsrn.org/lsrn/schema.owl#Schema">
<rdfs:label xml:lang="en">LSRN Schema</rdfs:label>
<skos:definition xml:lang="en">A schema for Life Science Record Names.</skos:definition>
<rdfs:comment xml:lang="en">
A member of this class describes the subject of a record, format of
its name (prefix and prefix-dependent part), and its mapping to other
identifiers and locators (URIs, URLs). Members of this class should have
unique URIs in http://www.lsrn.org/lsrn/registry.rdf# namespace; their
RDF identifiers serve as LSRN prefixes (e.g.
http://www.lsrn.org/lsrn/registry.rdf#GO defines the GO: prefix and GO
schema).
</rdfs:comment>
<vann:preferredNamespaceUri>
http://www.lsrn.org/lsrn/registry.rdf#
</vann:preferredNamespaceUri>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty>
<owl:DatatypeProperty
rdf:about="http://www.lsrn.org/lsrn/schema.owl#record_primary_subject"/>
</owl:onProperty>
<owl:maxCardinality
rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">
1</owl:maxCardinality>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty>
<owl:DatatypeProperty
rdf:about="http://www.lsrn.org/lsrn/schema.owl#id_pattern_ere"/>
</owl:onProperty>
<owl:maxCardinality
rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">
1</owl:maxCardinality>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty>
<owl:DatatypeProperty
rdf:about="http://www.lsrn.org/lsrn/schema.owl#redirect_to_ere"/>
</owl:onProperty>
<owl:maxCardinality
rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">
1</owl:maxCardinality>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty>
<owl:DatatypeProperty
rdf:about="http://www.lsrn.org/lsrn/schema.owl#redirect_to_prefix"/>
</owl:onProperty>
<owl:maxCardinality
rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">
1</owl:maxCardinality>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty>
<owl:DatatypeProperty
rdf:about="http://www.lsrn.org/lsrn/schema.owl#id_example"/>
</owl:onProperty>
<owl:maxCardinality
rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">
1</owl:maxCardinality>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty>
<owl:DatatypeProperty
rdf:about="http://www.lsrn.org/lsrn/schema.owl#id_example_subject"/>
</owl:onProperty>
<owl:maxCardinality
rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">
1</owl:maxCardinality>
</owl:Restriction>
</rdfs:subClassOf>
<dct:issued>2006-02-12</dct:issued>
<skos:changeNote
rdf:value="Added comment"
dc:date="2006-02-12"
dc:creator="Sergei Egorov"/>
</owl:Class>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#database">
<rdfs:label xml:lang="en">source database</rdfs:label>
<skos:definition xml:lang="en">
The name of the database storing the record, e.g. 'Gene Ontology'.
</skos:definition>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#database_url">
<rdfs:label xml:lang="en">database URL</rdfs:label>
<skos:definition xml:lang="en">
Web address of the database storing the record.
</skos:definition>
<rdfs:comment xml:lang="en">
This should be a link to the database's home page or some other good
starting point for exploration of the database's metadata and content.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#anyURI"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#record_primary_subject">
<rdfs:label xml:lang="en">primary subject of db record</rdfs:label>
<skos:definition xml:lang="en">
Primary subject of database record, e.g. 'gene'.
</skos:definition>
<rdfs:comment xml:lang="en">
In the future, this property will be accompanied by a reference to a
term from a suitable ontology of common subjects of life science
database records. To simplify the transition, please try to use one of
the existing values before inventing your own.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#record_subject">
<rdfs:label xml:lang="en">secondary subject of db record</rdfs:label>
<skos:definition xml:lang="en">
Secondary subject of database record, e.g. 'gene-related
genetic disorders'.
</skos:definition>
<rdfs:comment xml:lang="en">
In the future, this property will be accompanied by a reference to a
term from a suitable ontology of common subjects of life science
database records. To simplify the transition, please try to use one of
the existing values before inventing your own.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#id_type">
<rdfs:label xml:lang="en">type of a database ID</rdfs:label>
<skos:definition xml:lang="en">
ID type, e.g. 'sequential identifier' or 'accession number'.
</skos:definition>
<rdfs:comment xml:lang="en">
In the future, this property will be accompanied by a reference to a
term from a suitable ontology of common maintenance models for database
identifiers. To simplify the transition, please try to use one of the
existing values before inventing your own.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#id_format">
<rdfs:label xml:lang="en">format of a database ID</rdfs:label>
<skos:definition xml:lang="en">
Free-text format description, e.g. 'positive numeral'.
</skos:definition>
<rdfs:comment xml:lang="en">
In the future, this property will be accompanied by a reference to a
term from a suitable ontology of common syntaxes for database
identifiers. To simplify the transition, please try to use one of the
existing values before inventing your own.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#id_pattern_ere">
<rdfs:label xml:lang="en">regexp for database ID</rdfs:label>
<skos:definition xml:lang="en">
POSIX-style extended regexp pattern for database IDs, e.g. '[A-Z][0-9]+'.
</skos:definition>
<rdfs:comment xml:lang="en">
This property should be a valid POSIX ERE (extended regular expression).
It should be present if either redirect_to_ere or url_template_ere
properties are specified. Group subexpressions ised in id_pattern_ere
can be referred to via \1 .. \9 substitution patterns in the template
properties.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#id_example">
<rdfs:label xml:lang="en">example of ID</rdfs:label>
<skos:definition xml:lang="en">
Example of database ID for the record (sans prefix).
</skos:definition>
<rdfs:comment xml:lang="en">
This property should be a real ID. Together with the corresponding
id_example_subject, it is used to check the LSRN registry for dead links.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#id_example_subject">
<rdfs:label xml:lang="en">subject of ID example</rdfs:label>
<skos:definition xml:lang="en">
Subject for the example ID.
</skos:definition>
<rdfs:comment xml:lang="en">
This property is used together with id_example to check the LSRN
registry for dead links. For each URL template, a URL is produced by
substituting id_example, and the resulting resource is retrieved and
checked for literal presence of the id_example_subject string.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#redirect_to_prefix">
<rdfs:label xml:lang="en">redirect to prefix</rdfs:label>
<skos:definition xml:lang="en">
Another prefix to be used in place of the current one, e.g. 'INSD:'.
</skos:definition>
<rdfs:comment xml:lang="en">
This property is used by LSRN Resolver service to process alternative or
common names and propose their canonical variants. The replacement LSRN
is formed by appending the identifier part to the redirect_to_prefix
property, which should end in colon.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#redirect_to_ere">
<rdfs:label xml:lang="en">redirect via regexp</rdfs:label>
<skos:definition xml:lang="en">
A regexp template for replacement LSRN.
</skos:definition>
<rdfs:comment xml:lang="en">
This property should be a template used with id_pattern_ere regexp
pattern. The template is copied, making substitutions according to the
regexp match performed using id_pattern_ere. Each instance of '&' in
template is replaced by the entire identifier. Each instance of '\n',
where n is a digit between 1 and 9, is replaced by the substring
corresponding to parenthesized group in id_pattern_ere. To get a literal
'&' or '\n', prefix it in the template with '\'; to get a literal '\'
preceding '&' or '\n', prefix it with another '\'.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#url_template_prefix">
<rdfs:label xml:lang="en">URL template prefix</rdfs:label>
<skos:definition xml:lang="en">
A URL prefix to form a complete URL.
</skos:definition>
<rdfs:comment xml:lang="en">
This property is used by LSRN Resolver to form a URL for the record.
URLs are formed by appending the identifier part to each
url_template_prefix property.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#url_template_ere">
<rdfs:label xml:lang="en">URL template for ID regexp</rdfs:label>
<skos:definition xml:lang="en">
A regexp template to form a URL.
</skos:definition>
<rdfs:comment xml:lang="en">
This property is used by LSRN Resolver to form a URL for the record.
The template is copied, making substitutions according to the regexp
match performed using id_pattern_ere. Each instance of '&' in template
is replaced by the entire identifier. Each instance of '\n', where n is
a digit between 1 and 9, is replaced by the substring corresponding to
parenthesized group in id_pattern_ere. To get a literal '&' or '\n',
prefix it in the template with '\'; to get a literal '\' preceding '&'
or '\n', prefix it with another '\'.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#ncbi_db_xref">
<rdfs:label xml:lang="en">NCBI db_xref key</rdfs:label>
<skos:definition xml:lang="en">
NCBI db_xref key for the schema, if different from schema prefix.
</skos:definition>
<rdfs:comment xml:lang="en">
This property is used to preserve the original NCBI's db_xref key if it
contains characters which cannot be used in LSRN schema names.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.lsrn.org/lsrn/schema.owl#ariadne_rnef_property">
<rdfs:label xml:lang="en">RNEF property name</rdfs:label>
<skos:definition xml:lang="en">
Ariadne Genomics RNEF property name for the schema.
</skos:definition>
<rdfs:comment xml:lang="en">
This property is used to facilitate mapping between LSRN schemas and
external ontology.
</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://www.lsrn.org/lsrn/schema.owl#"/>
<rdfs:domain rdf:resource="http://www.lsrn.org/lsrn/schema.owl#Schema"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<dct:issued>2006-02-12</dct:issued>
</owl:DatatypeProperty>
</rdf:RDF>
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